﻿2026-01-05T01:33:08.1933826Z Current runner version: '2.330.0'
2026-01-05T01:33:08.1969979Z ##[group]Runner Image Provisioner
2026-01-05T01:33:08.1971146Z Hosted Compute Agent
2026-01-05T01:33:08.1971970Z Version: 20251202.455
2026-01-05T01:33:08.1972837Z Commit: 6c10caca4910e198df60de23adf20ad317c474e3
2026-01-05T01:33:08.1973865Z Build Date: 2025-12-02T15:56:59Z
2026-01-05T01:33:08.1974875Z Worker ID: {d041bd30-d6e7-4652-9fba-9936c0df4318}
2026-01-05T01:33:08.1975875Z ##[endgroup]
2026-01-05T01:33:08.1976591Z ##[group]Operating System
2026-01-05T01:33:08.1977397Z Microsoft Windows Server 2019
2026-01-05T01:33:08.1978319Z 10.0.17763
2026-01-05T01:33:08.1978959Z Datacenter
2026-01-05T01:33:08.1979838Z ##[endgroup]
2026-01-05T01:33:08.1980502Z ##[group]Runner Image
2026-01-05T01:33:08.1981225Z Image: windows-2019
2026-01-05T01:33:08.1981975Z Version: 20250623.2.0
2026-01-05T01:33:08.1983895Z Included Software: https://github.com/actions/runner-images/blob/win19/20250623.2/images/windows/Windows2019-Readme.md
2026-01-05T01:33:08.1986202Z Image Release: https://github.com/actions/runner-images/releases/tag/win19%2F20250623.2
2026-01-05T01:33:08.1987882Z ##[endgroup]
2026-01-05T01:33:08.1992883Z ##[group]GITHUB_TOKEN Permissions
2026-01-05T01:33:08.1996340Z Actions: write
2026-01-05T01:33:08.1997254Z ArtifactMetadata: write
2026-01-05T01:33:08.1997975Z Attestations: write
2026-01-05T01:33:08.1999070Z Checks: write
2026-01-05T01:33:08.1999711Z Contents: write
2026-01-05T01:33:08.2000398Z Deployments: write
2026-01-05T01:33:08.2001087Z Discussions: write
2026-01-05T01:33:08.2001817Z Issues: write
2026-01-05T01:33:08.2002450Z Metadata: read
2026-01-05T01:33:08.2003147Z Models: read
2026-01-05T01:33:08.2003851Z Packages: write
2026-01-05T01:33:08.2004495Z Pages: write
2026-01-05T01:33:08.2005273Z PullRequests: write
2026-01-05T01:33:08.2006116Z RepositoryProjects: write
2026-01-05T01:33:08.2006957Z SecurityEvents: write
2026-01-05T01:33:08.2007706Z Statuses: write
2026-01-05T01:33:08.2008518Z ##[endgroup]
2026-01-05T01:33:08.2011370Z Secret source: Actions
2026-01-05T01:33:08.2012286Z Prepare workflow directory
2026-01-05T01:33:08.2457219Z Prepare all required actions
2026-01-05T01:33:08.2494389Z Getting action download info
2026-01-05T01:33:08.5842215Z Download action repository 'actions/checkout@v4' (SHA:34e114876b0b11c390a56381ad16ebd13914f8d5)
2026-01-05T01:33:09.1673574Z Download action repository 'actions/setup-python@v5' (SHA:a26af69be951a213d495a4c3e4e4022e16d87065)
2026-01-05T01:33:09.8661737Z Download action repository 'actions/download-artifact@v4' (SHA:d3f86a106a0bac45b974a628896c90dbdf5c8093)
2026-01-05T01:33:10.5834681Z Complete job name: Test wheels on windows-2019 with Python 3.13
2026-01-05T01:33:10.7377173Z ##[group]Run actions/checkout@v4
2026-01-05T01:33:10.7377914Z with:
2026-01-05T01:33:10.7378162Z   repository: worm-portal/aqequil
2026-01-05T01:33:10.7378715Z   token: ***
2026-01-05T01:33:10.7378931Z   ssh-strict: true
2026-01-05T01:33:10.7379134Z   ssh-user: git
2026-01-05T01:33:10.7379387Z   persist-credentials: true
2026-01-05T01:33:10.7379639Z   clean: true
2026-01-05T01:33:10.7379868Z   sparse-checkout-cone-mode: true
2026-01-05T01:33:10.7380143Z   fetch-depth: 1
2026-01-05T01:33:10.7380353Z   fetch-tags: false
2026-01-05T01:33:10.7380580Z   show-progress: true
2026-01-05T01:33:10.7380792Z   lfs: false
2026-01-05T01:33:10.7380991Z   submodules: false
2026-01-05T01:33:10.7381207Z   set-safe-directory: true
2026-01-05T01:33:10.7381657Z ##[endgroup]
2026-01-05T01:33:10.8943490Z Syncing repository: worm-portal/aqequil
2026-01-05T01:33:10.8944868Z ##[group]Getting Git version info
2026-01-05T01:33:10.8945239Z Working directory is 'D:\a\aqequil\aqequil'
2026-01-05T01:33:10.9880856Z [command]"C:\Program Files\Git\bin\git.exe" version
2026-01-05T01:33:11.3486891Z git version 2.50.0.windows.1
2026-01-05T01:33:11.3538209Z ##[endgroup]
2026-01-05T01:33:11.3556693Z Temporarily overriding HOME='D:\a\_temp\de368d5f-f9fb-45e9-8dde-5464cbdbecaa' before making global git config changes
2026-01-05T01:33:11.3560664Z Adding repository directory to the temporary git global config as a safe directory
2026-01-05T01:33:11.3572736Z [command]"C:\Program Files\Git\bin\git.exe" config --global --add safe.directory D:\a\aqequil\aqequil
2026-01-05T01:33:11.4076588Z Deleting the contents of 'D:\a\aqequil\aqequil'
2026-01-05T01:33:11.4082232Z ##[group]Initializing the repository
2026-01-05T01:33:11.4095308Z [command]"C:\Program Files\Git\bin\git.exe" init D:\a\aqequil\aqequil
2026-01-05T01:33:11.4887667Z Initialized empty Git repository in D:/a/aqequil/aqequil/.git/
2026-01-05T01:33:11.4938592Z [command]"C:\Program Files\Git\bin\git.exe" remote add origin https://github.com/worm-portal/aqequil
2026-01-05T01:33:11.5435276Z ##[endgroup]
2026-01-05T01:33:11.5435785Z ##[group]Disabling automatic garbage collection
2026-01-05T01:33:11.5453489Z [command]"C:\Program Files\Git\bin\git.exe" config --local gc.auto 0
2026-01-05T01:33:11.5696378Z ##[endgroup]
2026-01-05T01:33:11.5696840Z ##[group]Setting up auth
2026-01-05T01:33:11.5713718Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp core\.sshCommand
2026-01-05T01:33:11.5966279Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :\""
2026-01-05T01:33:12.8657065Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2026-01-05T01:33:12.8913226Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :\""
2026-01-05T01:33:13.3314767Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp ^includeIf\.gitdir:
2026-01-05T01:33:13.3573931Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "git config --local --show-origin --name-only --get-regexp remote.origin.url"
2026-01-05T01:33:13.7696430Z [command]"C:\Program Files\Git\bin\git.exe" config --local http.https://github.com/.extraheader "AUTHORIZATION: basic ***"
2026-01-05T01:33:13.7953330Z ##[endgroup]
2026-01-05T01:33:13.7953914Z ##[group]Fetching the repository
2026-01-05T01:33:13.7970563Z [command]"C:\Program Files\Git\bin\git.exe" -c protocol.version=2 fetch --no-tags --prune --no-recurse-submodules --depth=1 origin +0fba8641708a9a29f5cf75d5e1aa5af56402a902:refs/tags/v1.0.1
2026-01-05T01:33:15.0554836Z From https://github.com/worm-portal/aqequil
2026-01-05T01:33:15.0558332Z  * [new ref]         0fba8641708a9a29f5cf75d5e1aa5af56402a902 -> v1.0.1
2026-01-05T01:33:15.0842974Z ##[endgroup]
2026-01-05T01:33:15.0843516Z ##[group]Determining the checkout info
2026-01-05T01:33:15.0845677Z ##[endgroup]
2026-01-05T01:33:15.0860052Z [command]"C:\Program Files\Git\bin\git.exe" sparse-checkout disable
2026-01-05T01:33:15.1245555Z [command]"C:\Program Files\Git\bin\git.exe" config --local --unset-all extensions.worktreeConfig
2026-01-05T01:33:15.1499081Z ##[group]Checking out the ref
2026-01-05T01:33:15.1512742Z [command]"C:\Program Files\Git\bin\git.exe" checkout --progress --force refs/tags/v1.0.1
2026-01-05T01:33:15.4468478Z Note: switching to 'refs/tags/v1.0.1'.
2026-01-05T01:33:15.4468795Z 
2026-01-05T01:33:15.4469022Z You are in 'detached HEAD' state. You can look around, make experimental
2026-01-05T01:33:15.4469877Z changes and commit them, and you can discard any commits you make in this
2026-01-05T01:33:15.4471405Z state without impacting any branches by switching back to a branch.
2026-01-05T01:33:15.4472170Z 
2026-01-05T01:33:15.4472385Z If you want to create a new branch to retain commits you create, you may
2026-01-05T01:33:15.4472846Z do so (now or later) by using -c with the switch command. Example:
2026-01-05T01:33:15.4473094Z 
2026-01-05T01:33:15.4473398Z   git switch -c <new-branch-name>
2026-01-05T01:33:15.4474932Z 
2026-01-05T01:33:15.4475075Z Or undo this operation with:
2026-01-05T01:33:15.4475393Z 
2026-01-05T01:33:15.4475530Z   git switch -
2026-01-05T01:33:15.4475710Z 
2026-01-05T01:33:15.4476042Z Turn off this advice by setting config variable advice.detachedHead to false
2026-01-05T01:33:15.4476561Z 
2026-01-05T01:33:15.4476921Z HEAD is now at 0fba864 Add automatic versioning from git tags using setuptools_scm
2026-01-05T01:33:15.4508824Z ##[endgroup]
2026-01-05T01:33:15.4893443Z [command]"C:\Program Files\Git\bin\git.exe" log -1 --format=%H
2026-01-05T01:33:15.5104832Z 0fba8641708a9a29f5cf75d5e1aa5af56402a902
2026-01-05T01:33:15.5474330Z ##[group]Run actions/setup-python@v5
2026-01-05T01:33:15.5474746Z with:
2026-01-05T01:33:15.5474971Z   python-version: 3.13
2026-01-05T01:33:15.5475206Z   check-latest: false
2026-01-05T01:33:15.5475596Z   token: ***
2026-01-05T01:33:15.5475801Z   update-environment: true
2026-01-05T01:33:15.5476067Z   allow-prereleases: false
2026-01-05T01:33:15.5476312Z   freethreaded: false
2026-01-05T01:33:15.5476545Z ##[endgroup]
2026-01-05T01:33:15.7838935Z ##[group]Installed versions
2026-01-05T01:33:15.8407527Z Successfully set up CPython (3.13.5)
2026-01-05T01:33:15.8408601Z ##[endgroup]
2026-01-05T01:33:15.8680171Z ##[group]Run actions/download-artifact@v4
2026-01-05T01:33:15.8680760Z with:
2026-01-05T01:33:15.8681045Z   name: wheels-windows-2019
2026-01-05T01:33:15.8681313Z   path: wheelhouse
2026-01-05T01:33:15.8681517Z   merge-multiple: false
2026-01-05T01:33:15.8681791Z   repository: worm-portal/aqequil
2026-01-05T01:33:15.8682049Z   run-id: 20702070857
2026-01-05T01:33:15.8682257Z env:
2026-01-05T01:33:15.8682537Z   pythonLocation: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:33:15.8683037Z   PKG_CONFIG_PATH: C:\hostedtoolcache\windows\Python\3.13.5\x64/lib/pkgconfig
2026-01-05T01:33:15.8683502Z   Python_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:33:15.8683922Z   Python2_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:33:15.8684381Z   Python3_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:33:15.8684699Z ##[endgroup]
2026-01-05T01:33:16.1249673Z Downloading single artifact
2026-01-05T01:33:16.3152758Z Preparing to download the following artifacts:
2026-01-05T01:33:16.3154316Z - wheels-windows-2019 (ID: 5019935684, Size: 23024769, Expected Digest: sha256:b79d51ee2f30d1247dff1e95897f46290a31dfe3822f377c914f152c5233a68a)
2026-01-05T01:33:16.4229862Z Redirecting to blob download url: https://productionresultssa18.blob.core.windows.net/actions-results/26a74c06-72e1-4403-8f14-91bf0d49fcbc/workflow-job-run-dc62d33d-f61e-5c66-b8b0-b0fb4e2697e9/artifacts/2d74564dac50ace46aa55f3b0736466cb259cb536408fda096bfbd335df3bf65.zip
2026-01-05T01:33:16.4232250Z Starting download of artifact to: D:\a\aqequil\aqequil\wheelhouse
2026-01-05T01:33:16.6460148Z (node:5356) [DEP0005] DeprecationWarning: Buffer() is deprecated due to security and usability issues. Please use the Buffer.alloc(), Buffer.allocUnsafe(), or Buffer.from() methods instead.
2026-01-05T01:33:16.6461775Z (Use `node --trace-deprecation ...` to show where the warning was created)
2026-01-05T01:33:17.6772134Z SHA256 digest of downloaded artifact is b79d51ee2f30d1247dff1e95897f46290a31dfe3822f377c914f152c5233a68a
2026-01-05T01:33:17.6773396Z Artifact download completed successfully.
2026-01-05T01:33:17.6773958Z Total of 1 artifact(s) downloaded
2026-01-05T01:33:17.6782720Z Download artifact has finished successfully
2026-01-05T01:33:17.7100101Z ##[group]Run PYVER=$(echo "3.13" | tr -d '.')
2026-01-05T01:33:17.7100527Z [36;1mPYVER=$(echo "3.13" | tr -d '.')[0m
2026-01-05T01:33:17.7100933Z [36;1mpython -m pip install wheelhouse/aqequil-*-cp${PYVER}-*.whl[0m
2026-01-05T01:33:17.7166276Z shell: C:\Program Files\Git\bin\bash.EXE --noprofile --norc -e -o pipefail {0}
2026-01-05T01:33:17.7166652Z env:
2026-01-05T01:33:17.7166920Z   pythonLocation: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:33:17.7167569Z   PKG_CONFIG_PATH: C:\hostedtoolcache\windows\Python\3.13.5\x64/lib/pkgconfig
2026-01-05T01:33:17.7168011Z   Python_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:33:17.7168401Z   Python2_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:33:17.7168825Z   Python3_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:33:17.7169127Z ##[endgroup]
2026-01-05T01:33:22.1511029Z Processing d:\a\aqequil\aqequil\wheelhouse\aqequil-1.0.2.dev0+g0fba86417.d20260105-cp313-cp313-win_amd64.whl
2026-01-05T01:33:22.4651829Z Collecting pandas (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:22.5290981Z   Downloading pandas-2.3.3-cp313-cp313-win_amd64.whl.metadata (19 kB)
2026-01-05T01:33:22.7738601Z Collecting numpy (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:22.7923665Z   Downloading numpy-2.4.0-cp313-cp313-win_amd64.whl.metadata (6.6 kB)
2026-01-05T01:33:22.9566101Z Collecting matplotlib (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:22.9743146Z   Downloading matplotlib-3.10.8-cp313-cp313-win_amd64.whl.metadata (52 kB)
2026-01-05T01:33:23.0723077Z Collecting plotly (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.0899910Z   Downloading plotly-6.5.0-py3-none-any.whl.metadata (8.5 kB)
2026-01-05T01:33:23.1833058Z Collecting ipython (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.2009408Z   Downloading ipython-9.8.0-py3-none-any.whl.metadata (4.5 kB)
2026-01-05T01:33:23.2595886Z Collecting chemparse (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.2769348Z   Downloading chemparse-0.3.2-py3-none-any.whl.metadata (1.7 kB)
2026-01-05T01:33:23.3343106Z Collecting dill (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.3522393Z   Downloading dill-0.4.0-py3-none-any.whl.metadata (10 kB)
2026-01-05T01:33:23.3975690Z Collecting periodictable (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.4148296Z   Downloading periodictable-2.0.2-py3-none-any.whl.metadata (5.4 kB)
2026-01-05T01:33:23.4713599Z Collecting natsort (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.4894842Z   Downloading natsort-8.4.0-py3-none-any.whl.metadata (21 kB)
2026-01-05T01:33:23.5477590Z Collecting roman (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.5654546Z   Downloading roman-5.2-py3-none-any.whl.metadata (4.3 kB)
2026-01-05T01:33:23.6301732Z Collecting ipywidgets (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.6470619Z   Downloading ipywidgets-8.1.8-py3-none-any.whl.metadata (2.4 kB)
2026-01-05T01:33:23.7121666Z Collecting wormutils (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.7312648Z   Downloading wormutils-0.2.0-py3-none-any.whl.metadata (723 bytes)
2026-01-05T01:33:23.7979936Z Collecting pychnosz (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.8491892Z   Downloading pychnosz-1.1.12-cp313-cp313-win_amd64.whl.metadata (8.4 kB)
2026-01-05T01:33:23.9301454Z Collecting colorama>=0.4.4 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.9473315Z   Downloading colorama-0.4.6-py2.py3-none-any.whl.metadata (17 kB)
2026-01-05T01:33:23.9951425Z Collecting decorator>=4.3.2 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.0120240Z   Downloading decorator-5.2.1-py3-none-any.whl.metadata (3.9 kB)
2026-01-05T01:33:24.0745647Z Collecting ipython-pygments-lexers>=1.0.0 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.0914240Z   Downloading ipython_pygments_lexers-1.1.1-py3-none-any.whl.metadata (1.1 kB)
2026-01-05T01:33:24.1547523Z Collecting jedi>=0.18.1 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.1871431Z   Downloading jedi-0.19.2-py2.py3-none-any.whl.metadata (22 kB)
2026-01-05T01:33:24.2414083Z Collecting matplotlib-inline>=0.1.5 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.2584274Z   Downloading matplotlib_inline-0.2.1-py3-none-any.whl.metadata (2.3 kB)
2026-01-05T01:33:24.3524525Z Collecting prompt_toolkit<3.1.0,>=3.0.41 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.3730646Z   Downloading prompt_toolkit-3.0.52-py3-none-any.whl.metadata (6.4 kB)
2026-01-05T01:33:24.4396044Z Collecting pygments>=2.11.0 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.4568018Z   Downloading pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB)
2026-01-05T01:33:24.5122294Z Collecting stack_data>=0.6.0 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.5328282Z   Downloading stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
2026-01-05T01:33:24.6129576Z Collecting traitlets>=5.13.0 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
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2026-01-05T01:33:30.4724004Z Downloading certifi-2026.1.4-py3-none-any.whl (152 kB)
2026-01-05T01:33:30.8615411Z Installing collected packages: pytz, pure-eval, widgetsnbextension, wcwidth, urllib3, tzdata, traitlets, six, roman, pyparsing, pygments, pillow, parso, packaging, numpy, natsort, narwhals, kiwisolver, jupyterlab_widgets, importlib_resources, idna, fonttools, executing, dill, decorator, cycler, comm, colorama, chemparse, charset_normalizer, certifi, asttokens, stack_data, scipy, requests, python-dateutil, prompt_toolkit, plotly, periodictable, matplotlib-inline, jedi, ipython-pygments-lexers, contourpy, pandas, matplotlib, ipython, wormutils, pychnosz, ipywidgets, aqequil
2026-01-05T01:34:18.6946895Z 
2026-01-05T01:34:18.7010271Z Successfully installed aqequil-1.0.2.dev0+g0fba86417.d20260105 asttokens-3.0.1 certifi-2026.1.4 charset_normalizer-3.4.4 chemparse-0.3.2 colorama-0.4.6 comm-0.2.3 contourpy-1.3.3 cycler-0.12.1 decorator-5.2.1 dill-0.4.0 executing-2.2.1 fonttools-4.61.1 idna-3.11 importlib_resources-6.5.2 ipython-9.8.0 ipython-pygments-lexers-1.1.1 ipywidgets-8.1.8 jedi-0.19.2 jupyterlab_widgets-3.0.16 kiwisolver-1.4.9 matplotlib-3.10.8 matplotlib-inline-0.2.1 narwhals-2.14.0 natsort-8.4.0 numpy-2.4.0 packaging-25.0 pandas-2.3.3 parso-0.8.5 periodictable-2.0.2 pillow-12.1.0 plotly-6.5.0 prompt_toolkit-3.0.52 pure-eval-0.2.3 pychnosz-1.1.12 pygments-2.19.2 pyparsing-3.3.1 python-dateutil-2.9.0.post0 pytz-2025.2 requests-2.32.5 roman-5.2 scipy-1.16.3 six-1.17.0 stack_data-0.6.3 traitlets-5.14.3 tzdata-2025.3 urllib3-2.6.2 wcwidth-0.2.14 widgetsnbextension-4.0.15 wormutils-0.2.0
2026-01-05T01:34:18.8032133Z 
2026-01-05T01:34:18.8034042Z [notice] A new release of pip is available: 25.1.1 -> 25.3
2026-01-05T01:34:18.8034658Z [notice] To update, run: python.exe -m pip install --upgrade pip
2026-01-05T01:34:19.2919634Z ##[group]Run cp "$GITHUB_WORKSPACE/test_integration.py" "$RUNNER_TEMP/"
2026-01-05T01:34:19.2920266Z [36;1mcp "$GITHUB_WORKSPACE/test_integration.py" "$RUNNER_TEMP/"[0m
2026-01-05T01:34:19.2920609Z [36;1mcd "$RUNNER_TEMP"[0m
2026-01-05T01:34:19.2920831Z [36;1mpython test_integration.py[0m
2026-01-05T01:34:19.2934000Z shell: C:\Program Files\Git\bin\bash.EXE --noprofile --norc -e -o pipefail {0}
2026-01-05T01:34:19.2934379Z env:
2026-01-05T01:34:19.2934633Z   pythonLocation: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:34:19.2935063Z   PKG_CONFIG_PATH: C:\hostedtoolcache\windows\Python\3.13.5\x64/lib/pkgconfig
2026-01-05T01:34:19.2935500Z   Python_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:34:19.2935887Z   Python2_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:34:19.2936271Z   Python3_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.13.5\x64
2026-01-05T01:34:19.2936580Z ##[endgroup]
2026-01-05T01:34:54.0377676Z 
2026-01-05T01:34:54.0378240Z ============================================================
2026-01-05T01:34:54.0378850Z AQEQUIL INTEGRATION TEST SUITE
2026-01-05T01:34:54.0379287Z ============================================================
2026-01-05T01:34:54.0379789Z Python: 3.13.5
2026-01-05T01:34:54.0380117Z Platform: win32
2026-01-05T01:34:54.0380509Z Architecture: AMD64
2026-01-05T01:34:54.0380873Z ============================================================
2026-01-05T01:34:54.0381394Z ============================================================
2026-01-05T01:34:54.0381983Z Test 1: Checking for bundled EQ3/6 executables
2026-01-05T01:34:54.0382590Z ============================================================
2026-01-05T01:34:54.0383732Z [OK] Found bundled executables at: C:\hostedtoolcache\windows\Python\3.13.5\x64\Lib\site-packages\aqequil\bin
2026-01-05T01:34:54.0384745Z   [OK] eq3nr.exe (1.47 MB)
2026-01-05T01:34:54.0385421Z   [OK] eq6.exe (2.24 MB)
2026-01-05T01:34:54.0385771Z   [OK] eqpt.exe (1.01 MB)
2026-01-05T01:34:54.0386006Z 
2026-01-05T01:34:54.0386181Z ============================================================
2026-01-05T01:34:54.0386756Z Test 2: Testing aqequil import and basic usage
2026-01-05T01:34:54.0387337Z ============================================================
2026-01-05T01:34:54.0387804Z [OK] Successfully imported aqequil
2026-01-05T01:34:54.0388473Z [OK] Found test data at: C:\hostedtoolcache\windows\Python\3.13.5\x64\Lib\site-packages\aqequil\test_data\input_example_wrm.csv
2026-01-05T01:34:54.0389082Z 
2026-01-05T01:34:54.0389187Z ============================================================
2026-01-05T01:34:54.0389586Z Test 3: Downloading latest data0.wrm from WORM-db
2026-01-05T01:34:54.0389945Z ============================================================
2026-01-05T01:34:54.0390578Z Downloading data0.wrm from https://raw.githubusercontent.com/worm-portal/WORM-db/master/data0.wrm...
2026-01-05T01:34:54.0391229Z [OK] Downloaded data0.wrm (573.8 KB)
2026-01-05T01:34:54.0391591Z [OK] Copied data0.wrm to test_data (replaced existing)
2026-01-05T01:34:54.0392003Z [OK] Copied data0.wrm to databases (replaced existing)
2026-01-05T01:34:54.0392272Z 
2026-01-05T01:34:54.0392375Z ============================================================
2026-01-05T01:34:54.0392745Z Test 4: Testing runeqpt (data0 to data1 conversion)
2026-01-05T01:34:54.0393108Z ============================================================
2026-01-05T01:34:54.0393564Z [INFO] Working directory: C:\Users\RUNNER~1\AppData\Local\Temp\tmpz765_7su
2026-01-05T01:34:54.0394046Z [OK] Copied data0.wrm to working directory
2026-01-05T01:34:54.0394303Z Running EQPT on data0.wrm...
2026-01-05T01:34:54.0394492Z [OK] EQPT completed
2026-01-05T01:34:54.0394675Z [OK] data1.wrm created (0.36 MB)
2026-01-05T01:34:54.0394965Z [OK] Copied data1.wrm to bundled databases (replaced existing)
2026-01-05T01:34:54.0395202Z 
2026-01-05T01:34:54.0397886Z ============================================================
2026-01-05T01:34:54.0398299Z Test 5: Testing simple speciation (wrm database)
2026-01-05T01:34:54.0398619Z ============================================================
2026-01-05T01:34:54.0399193Z Running speciation on C:\hostedtoolcache\windows\Python\3.13.5\x64\Lib\site-packages\aqequil\test_data\input_example_wrm.csv...
2026-01-05T01:34:54.0399875Z [INFO] Working directory: C:\Users\RUNNER~1\AppData\Local\Temp\tmp51f78762
2026-01-05T01:34:54.0400262Z [OK] Copied data0.wrm to working directory
2026-01-05T01:34:54.0400519Z Running EQPT to create data1.wrm...
2026-01-05T01:34:54.0400762Z [OK] EQPT completed, data1.wrm created
2026-01-05T01:34:54.0401017Z [OK] AqEquil instance created with wrm database
2026-01-05T01:34:54.0401627Z The input file column 'logfO2' will be used to set sample redox state. If a another column is desired, set it manually using the redox_flag parameter.
2026-01-05T01:34:54.0402427Z No 'charge_balance_on' column found in input file. Defaulting to no charge balancing for all samples.
2026-01-05T01:34:54.0403164Z Warning: no 'logfO2' column found. Attempting to find a column for aqueous O2 to estimate logfO2 at sample temperature and pressure...
2026-01-05T01:34:54.0403718Z Using wrm to speciate Bison Pool
2026-01-05T01:34:54.0403958Z Using wrm to speciate Spray Geyser Source
2026-01-05T01:34:54.0404488Z Warning: non-numeric aqueous O2 value in sample Crater Hills Geyser. Resorting to using Log fO2 (log bars) with a value of -6
2026-01-05T01:34:54.0405023Z Using wrm to speciate Crater Hills Geyser
2026-01-05T01:34:54.0405269Z Using wrm to speciate Ambergris
2026-01-05T01:34:54.0405502Z Using wrm to speciate MLS Source
2026-01-05T01:34:54.0405719Z Using wrm to speciate Gas Crack
2026-01-05T01:34:54.0405929Z Using wrm to speciate Snail
2026-01-05T01:34:54.0406131Z Finished!
2026-01-05T01:34:54.0406282Z [OK] Speciation completed
2026-01-05T01:34:54.0407069Z [OK] aq_distribution is a DataFrame with 81 rows
2026-01-05T01:34:54.0407266Z 
2026-01-05T01:34:54.0407366Z ============================================================
2026-01-05T01:34:54.0407625Z Test 6: Testing water-rock reaction
2026-01-05T01:34:54.0407871Z ============================================================
2026-01-05T01:34:54.0408413Z Running speciation on C:\hostedtoolcache\windows\Python\3.13.5\x64\Lib\site-packages\aqequil\test_data\input_example_wrm.csv...
2026-01-05T01:34:54.0409051Z [INFO] Working directory: C:\Users\RUNNER~1\AppData\Local\Temp\tmpuhrqvsmd
2026-01-05T01:34:54.0409491Z [OK] Copied wrm_data_latest.csv to bundled databases (replaced existing)
2026-01-05T01:34:54.0409912Z [OK] Copied elements.csv to bundled databases (replaced existing)
2026-01-05T01:34:54.0410409Z [OK] Copied solid_solutions.csv to bundled databases (replaced existing)
2026-01-05T01:34:54.0410867Z [OK] Copied wrm_data_logk.csv to bundled databases (replaced existing)
2026-01-05T01:34:54.0411282Z [OK] Copied wrm_data_logk_s.csv to bundled databases (replaced existing)
2026-01-05T01:34:54.0411952Z The input file column 'logfO2' will be used to set sample redox state. If a another column is desired, set it manually using the redox_flag parameter.
2026-01-05T01:34:54.0412605Z Getting wrm_data_latest.csv ready. This will take a moment...
2026-01-05T01:34:54.0413095Z No 'charge_balance_on' column found in input file. Defaulting to no charge balancing for all samples.
2026-01-05T01:34:54.0413766Z Warning: a column for Pressure was not found in the sample input file. Defaulting to water saturation pressure...
2026-01-05T01:34:54.0414533Z Warning: no 'logfO2' column found. Attempting to find a column for aqueous O2 to estimate logfO2 at sample temperature and pressure...
2026-01-05T01:34:54.0415111Z Using wrm_data_latest.csv to speciate Bison Pool
2026-01-05T01:34:54.0415436Z Using wrm_data_latest.csv to speciate Spray Geyser Source
2026-01-05T01:34:54.0415998Z Warning: non-numeric aqueous O2 value in sample Crater Hills Geyser. Resorting to using Log fO2 (log bars) with a value of -6
2026-01-05T01:34:54.0416950Z Using wrm_data_latest.csv to speciate Crater Hills Geyser
2026-01-05T01:34:54.0417297Z Using wrm_data_latest.csv to speciate Ambergris
2026-01-05T01:34:54.0417591Z Using wrm_data_latest.csv to speciate MLS Source
2026-01-05T01:34:54.0417870Z Using wrm_data_latest.csv to speciate Gas Crack
2026-01-05T01:34:54.0418535Z Using wrm_data_latest.csv to speciate Snail
2026-01-05T01:34:54.0418951Z Finished!
2026-01-05T01:34:54.0419232Z [OK] Initial speciation completed
2026-01-05T01:34:54.0419627Z [OK] Reaction prepared
2026-01-05T01:34:54.0419976Z Running water-rock reaction...
2026-01-05T01:34:54.0420404Z Using wrm_data_latest.csv to react Bison.Pool
2026-01-05T01:34:54.0420641Z 
2026-01-05T01:34:54.0420796Z The sample 'Bison Pool' experienced errors during the reaction:
2026-01-05T01:34:54.0421183Z  * Error - (EQ6/intmtb) A mass balance is defined on the input
2026-01-05T01:34:54.0421582Z        file for NH4+ (Aqueous solution), but this species isn't in the
2026-01-05T01:34:54.0421992Z        currently active basis set. Either it isn't on the current data file
2026-01-05T01:34:54.0422404Z        or it has been suppressed as by an nxmod or iopt(15) option.
2026-01-05T01:34:54.0422635Z 
2026-01-05T01:34:54.0422969Z Mass transfer results for sample 'Bison Pool' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:54.0423398Z 
2026-01-05T01:34:54.0423535Z Using wrm_data_latest.csv to react Spray.Geyser.Source
2026-01-05T01:34:54.0423744Z 
2026-01-05T01:34:54.0423919Z The sample 'Spray Geyser Source' experienced errors during the reaction:
2026-01-05T01:34:54.0424318Z  * Error - (EQ6/intrct) The reactant antigorite isn't among
2026-01-05T01:34:54.0424610Z        the loaded minerals.
2026-01-05T01:34:54.0424738Z 
2026-01-05T01:34:54.0425101Z Mass transfer results for sample 'Spray Geyser Source' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:54.0425710Z 
2026-01-05T01:34:54.0425839Z Using wrm_data_latest.csv to react Crater.Hills.Geyser
2026-01-05T01:34:54.0426147Z Using wrm_data_latest.csv to react Ambergris
2026-01-05T01:34:54.0426426Z Using wrm_data_latest.csv to react MLS.Source
2026-01-05T01:34:54.0426689Z Using wrm_data_latest.csv to react Gas.Crack
2026-01-05T01:34:54.0426872Z 
2026-01-05T01:34:54.0427016Z The sample 'Gas Crack' experienced errors during the reaction:
2026-01-05T01:34:54.0427439Z  * Error - (EQ6/path) The equilibrium calculation failed at the initial value
2026-01-05T01:34:54.0427801Z        of reaction progress.
2026-01-05T01:34:54.0427935Z 
2026-01-05T01:34:54.0428259Z Mass transfer results for sample 'Gas Crack' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:54.0428692Z 
2026-01-05T01:34:54.0428778Z Using wrm_data_latest.csv to react Snail
2026-01-05T01:34:54.0428957Z 
2026-01-05T01:34:54.0429091Z The sample 'Snail' experienced errors during the reaction:
2026-01-05T01:34:54.0429500Z  * Error - (EQ6/path) The equilibrium calculation failed at the initial value
2026-01-05T01:34:54.0429843Z        of reaction progress.
2026-01-05T01:34:54.0429985Z 
2026-01-05T01:34:54.0430294Z Mass transfer results for sample 'Snail' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:54.0430706Z 
2026-01-05T01:34:54.0430789Z [OK] Reaction completed
2026-01-05T01:34:54.0431006Z [OK] misc_params is a DataFrame with 12 rows
2026-01-05T01:34:54.0431180Z 
2026-01-05T01:34:54.0431261Z ============================================================
2026-01-05T01:34:54.0431502Z TEST SUMMARY
2026-01-05T01:34:54.0431676Z ============================================================
2026-01-05T01:34:54.0431928Z [PASS] Bundled Executables
2026-01-05T01:34:54.0432168Z [PASS] Import and Basic Usage
2026-01-05T01:34:54.0432389Z [PASS] Download Latest data0.wrm
2026-01-05T01:34:54.0432616Z [PASS] EQPT Data0 to Data1 Conversion
2026-01-05T01:34:54.0432872Z [PASS] Simple Speciation (wrm database)
2026-01-05T01:34:54.0433192Z [PASS] Water-Rock Reaction
2026-01-05T01:34:54.0433402Z ============================================================
2026-01-05T01:34:54.0433582Z 
2026-01-05T01:34:54.0433650Z [PASS] All tests passed!
2026-01-05T01:34:54.2899379Z Post job cleanup.
2026-01-05T01:34:54.5123044Z Post job cleanup.
2026-01-05T01:34:54.7273727Z [command]"C:\Program Files\Git\bin\git.exe" version
2026-01-05T01:34:54.7499211Z git version 2.50.0.windows.1
2026-01-05T01:34:54.7572878Z Temporarily overriding HOME='D:\a\_temp\8b9c75f6-4771-4061-b0b9-5890e67b14b9' before making global git config changes
2026-01-05T01:34:54.7573593Z Adding repository directory to the temporary git global config as a safe directory
2026-01-05T01:34:54.7588289Z [command]"C:\Program Files\Git\bin\git.exe" config --global --add safe.directory D:\a\aqequil\aqequil
2026-01-05T01:34:54.7860458Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp core\.sshCommand
2026-01-05T01:34:54.8141589Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :\""
2026-01-05T01:34:55.2452572Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2026-01-05T01:34:55.2662677Z http.https://github.com/.extraheader
2026-01-05T01:34:55.2713392Z [command]"C:\Program Files\Git\bin\git.exe" config --local --unset-all http.https://github.com/.extraheader
2026-01-05T01:34:55.2976957Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :\""
2026-01-05T01:34:55.7210808Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp ^includeIf\.gitdir:
2026-01-05T01:34:55.7478485Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "git config --local --show-origin --name-only --get-regexp remote.origin.url"
2026-01-05T01:34:56.1761512Z Cleaning up orphan processes
